Accelerating Python code with Cython and Numba

My experience accelerating the core continuous genetic algorithm of the GAlibrate package

Back in July, not long after I officially finished my postdoc, I decided to try writing a Python package that took advantage of either Cython or Numba to accelerate the core numerical algorithm(s); I wanted some more practical experience accelerating (numerically heavy) Python code (beyond NumPy). As my “real” problem... [Read More]

New publication and Cover art

Cardiolipin-Dependent Properties of Model Mitochondrial Membranes from Molecular Simulations

A paper that I’d been working on for quite a while (i.e., far too long) finally made it’s way out as a peer-reviewed journal article in the August 6th Issue of Biophysical Journal (still the current issue at the moment). The article is titled “Cardiolipin-Dependent Properties of Model Mitochondrial Membranes... [Read More]